The prevalence, genetic diversity, and evolution of SARS-CoV-2 in white-tailed deer in New York biorxivpreprint Cornell genetics geneticdiversity evolution SARSCoV2 COVID19 corornavirus covid deer
By Pooja Toshniwal PahariaSep 6 2022Reviewed by Danielle Ellis, B.Sc. In a recent study posted to bioRxiv*, researchers investigated the prevalence, genomic diversity, and evolution of severe acute respiratory syndrome coronavirus 2 among white-tailed deers in New York .
Retropharyngeal lymph node specimens were obtained from WTD under the NY State’s chronic wasting disease surveillance program for two seasons of hunting. The first season was between September and December 2020, and the second season was during the same period of the consecutive year. Most of the clusters were located in NY’s South Tier region, of which cluster 2 comprised the Allegany and Cattaraugus counties and all Gamma VOC sequences, whereas C7, C13, and C18 involved a single county each, with RR values of 2.6, 2.9 and 2.7, respectively. C7 and C18 mainly comprised the Alpha and Delta VOCs, respectively. Cluster 1 was the largest in the analysis comprising the Ulster, Sullivan, and Orange counties of Hudson Valley.
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