BugSigDB is a community-editable wiki that harmonizes how key microbial differential abundance methods and results are reported, identifying rare and common patterns across the literature of published host-associated microbiome studies.
This paper describes Semantic MediaWiki, the system we use for distributed data entry, review, storage and public visualization.A seminal article on gene set enrichment analysis, a widely used method that helped to motivate development of BugSigDB for microbiome research.
This paper describes recurrent patterns of taxonomic co-occurrence among healthy participants that we observe as being shared in many signatures of disease.This paper describes the individual participant data resource we use to analyze healthy microbiomes and for meta-analysis of differential abundance in colorectal cancer.
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BugSigDB — a database for identifying unusual abundance patterns in human microbiome studiesBugSigDB is a community-editable wiki that harmonizes how key microbial differential abundance methods and results are reported, identifying rare and common patterns across the literature of published host-associated microbiome studies.
Read more »