A study published in BMCMedicine shows that malaria parasite density in primigravid women declines as disease transmission declines, with no visible change in levels of antibodies to the parasite.
We are grateful to the mothers that participated in the study, the clinical teams at the Manhiça District Hospital, the Magude Health Center, and the Ilha Josina Health center, and the personnel at CISM and ISGlobal . We are also grateful to Dr. Deepak Gaur who offered very generously recombinant proteins produced in his lab.
Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, UKUniversité de Paris, Biologie Intégrée du Globule Rouge, UMR_S1134, Inserm, 75015, Paris, FranceDepartment of Parasites & Insect Vectors, Malaria Parasite Biology and Vaccines, Institut Pasteur, Paris, FranceMalaria Group, International Centre for Genetic Engineering and Biotechnology , New Delhi, IndiaEusébio MaceteDepartment of Physiologic Sciences, Faculty of...
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Wochenende — modular and flexible alignment-based shotgun metagenome analysis - BMC GenomicsBackground Shotgun metagenome analysis provides a robust and verifiable method for comprehensive microbiome analysis of fungal, viral, archaeal and bacterial taxonomy, particularly with regard to visualization of read mapping location, normalization options, growth dynamics and functional gene repertoires. Current read classification tools use non-standard output formats, or do not fully show information on mapping location. As reference datasets are not perfect, portrayal of mapping information is critical for judging results effectively. Results Our alignment-based pipeline, Wochenende, incorporates flexible quality control, trimming, mapping, various filters and normalization. Results are completely transparent and filters can be adjusted by the user. We observe stringent filtering of mismatches and use of mapping quality sharply reduces the number of false positives. Further modules allow genomic visualization and the calculation of growth rates, as well as integration and subsequent plotting of pipeline results as heatmaps or heat trees. Our novel normalization approach additionally allows calculation of absolute abundance profiles by comparison with reads assigned to the human host genome. Conclusion Wochenende has the ability to find and filter alignments to all kingdoms of life using both short and long reads, and requires only good quality reference genomes. Wochenende automatically combines multiple available modules ranging from quality control and normalization to taxonomic visualization. Wochenende is available at https://github.com/MHH-RCUG/nf_wochenende .
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Anti-Viral Responses of Tissue-Resident CD49a+ Lung NK Cells Are Dysregulated in COPD | American Journal of Respiratory and Critical Care Medicine | Articles in Press
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Combining tau-PET and fMRI meta-analyses for patient-centered prediction of cognitive decline in Alzheimer’s disease - Alzheimer's Research & TherapyBackground Tau-PET is a prognostic marker for cognitive decline in Alzheimer’s disease, and the heterogeneity of tau-PET patterns matches cognitive symptom heterogeneity. Thus, tau-PET may allow precision-medicine prediction of individual tau-related cognitive trajectories, which can be important for determining patient-specific cognitive endpoints in clinical trials. Here, we aimed to examine whether tau-PET in cognitive-domain-specific brain regions, identified via fMRI meta-analyses, allows the prediction of domain-specific cognitive decline. Further, we aimed to determine whether tau-PET-informed personalized cognitive composites capture patient-specific cognitive trajectories more sensitively than conventional cognitive measures. Methods We included Alzheimer’s Disease Neuroimaging Initiative (ADNI) participants classified as controls (i.e., amyloid-negative, cognitively normal, n=121) or Alzheimer’s disease-spectrum (i.e., amyloid-positive, cognitively normal to dementia, n=140), plus 111 AVID-1451-A05 participants for independent validation (controls/Alzheimer’s disease-spectrum=46/65). All participants underwent baseline 18F-flortaucipir tau-PET, amyloid-PET, and longitudinal cognitive testing to assess annual cognitive changes (i.e., episodic memory, language, executive functioning, visuospatial). Cognitive changes were calculated using linear mixed models. Independent meta-analytical task-fMRI activation maps for each included cognitive domain were obtained from the Neurosynth database and applied to tau-PET to determine tau-PET signal in cognitive-domain-specific brain regions. In bootstrapped linear regression, we assessed the strength of the relationship (i.e., partial R2) between cognitive-domain-specific tau-PET vs. global or temporal-lobe tau-PET and cognitive changes. Further, we used tau-PET-based prediction of domain-specific decline to compose personalized cognitive composites that were tailored to capture patient-specific cognitive decline. Resu
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Unusual type of antibody shows ultrapotent activity against ZikaAn unusual type of antibody that even at miniscule levels neutralizes the Zika virus and renders the virus infection undetectable in preclinical models has been identified by a team led by Weill Cornell Medicine, New York-Presbyterian and National Institutes of Health (NIH) investigators.
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Time Spent Gaming, Device Type, Addiction Scores, and Well-being of Adolescent English Gamers in the 2021 OxWell Survey: Latent Profile AnalysisBackground: The shift in the last decades to screen-based and increasingly web-based gaming activity has raised concerns about its impact on the development of children and adolescents. Despite decades of research into gaming and related psychosocial effects, the question remains how best to identify what degree or context of gaming may be a cause for concern. Objective: This study aimed to classify adolescents into gamer profiles based on both gaming behaviors and well-being. Once we distinguished the different gamer profiles, we aimed to explore whether membership to a specific profile could be predicted based on a range of personal characteristics and experiences that could then help identify those at risk. Methods: We explored gaming and well-being in an adolescent school population (aged 12-18 years) in England as part of the 2021 OxWell student survey. Self-report measures of time spent playing games on computers or consoles, time spent playing games on mobile phones, the Game Addiction Scale, and the Warwick-Edinburgh Mental Well-being Scale were used to classify adolescent heavy gamers (playing games for at least 3.5 hours a day) using latent profile analysis. We used multinomial logistic regression analysis to predict the profile membership based on a range of personal characteristics and experiences. Results: In total, 12,725 participants answered the OxWell gaming questions. Almost one-third (3970/12,725, 31.2%) indicated that they play games for at least 3.5 hours a day. The correlation between time spent playing video games overall and well-being was not significant (P=.41). The latent profile analysis distinguished 6 profiles of adolescent heavy gamers: adaptive computer gamers (1747/3970, 44%); casual computer gamers (873/3970, 22%); casual phone gamers (595/3970, 15%); unknown device gamers (476/3970, 12%); maladaptive computer gamers (238/3970, 6%); and maladaptive phone gamers (79/3970, 2%). In comparison with adaptive computer gamers, maladaptive
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A century of Azolla filiculoides biocontrol: the economic value of Stenopelmus rufinasus to Great Britain - CABI Agriculture and BioscienceBackground The invasive aquatic fern Azolla filiculoides has been present in Great Britain (GB) since the end of the nineteenth century, while its specialist natural enemy, the weevil Stenopelmus rufinasus was first recorded nearly four decades later, in 1921. The purpose of this study was to estimate the economic value of management cost savings resulting from the presence of S. rufinasus as a biocontrol agent of A. filiculoides in GB, including the value of additional augmentative releases of the weevil made since the mid-2000s, compared with the expected costs of control in the absence of S. rufinasus. Methods Estimated economic costs (based on the length/area of affected waterbodies, their infestation rates, and the proportion targeted for management) were calculated for three scenarios in which A. filiculoides occurs in GB: (1) without weevils; (2) with naturalised weevil populations; and (3) with naturalised weevil populations plus augmentative weevil releases. Results In the absence of biocontrol, the expected average annual costs of A. filiculoides management were estimated to range from £8.4 to 16.9 million (US$9.4 to 18.9 million) (£1 = US$1.12). The impacts of naturalised S. rufinasus populations on A. filiculoides were expected to reduce management costs to £0.8 to 1.6 million (US$0.9 to 1.8 million) per year. With additional augmentative releases of the weevil, A. filiculoides management costs were estimated to be lower still, ranging from £31.5 to 45.8 thousand (US$35.3 to 51.3 thousand) per year, giving an estimated benefit to cost ratio of augmentative S. rufinasus releases of 43.7:1 to 88.4:1. Conclusions The unintentional introduction of the weevil S. rufinasus to GB is estimated to have resulted in millions of pounds of savings annually in management costs for A. filiculoides. Additional augmentative releases of the weevil provide further net cost savings, tackling A. filiculoides outbreaks and bolstering naturalised populations. The use of herbic
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